Logging

exception_handler[source]

exception_handler(exception_type, exception, tb)

Helper Functions

set_css_in_cell_output[source]

set_css_in_cell_output()

Widgets

Base Widgets

class ZipUpload[source]

ZipUpload(path=None, layout=None)

Widgets upload and extract zip files

t = ZipUpload()
t.widget

class ItemsPerPage[source]

ItemsPerPage(path=None, plot_fn=None, items={}, srt=True, srt_by='name', srt_index=0, **kwargs)

Dropdown to show n items per page

t = ItemsPerPage(srt_index=1)
t.widget

class BaseParamWidget[source]

BaseParamWidget(config=None)

Parameter Widget Base Class

class BaseUI[source]

BaseUI(config=None, path=None)

Base UI for different steps

Path Widgets

class PathSelector[source]

PathSelector(start_dir, select_name='Select', select_file=False, tooltip=None)

Widgets to browse and select files or directories

t = PathSelector('')
display(t.button, t.dialog)

class PathDownloads[source]

PathDownloads(*args, **kwargs) :: PathSelector

Widgets to browse and download files or directories

t = PathDownloads('', select_file=True)
display(t.button, t.dialog)

class PathConfig[source]

PathConfig(*args, **kwargs) :: PathSelector

Widgets to browse and and load config file

t = PathConfig('', select_file=True)
display(t.button, t.dialog)

Table Widget

class ResultWidget[source]

ResultWidget()

Widget to show results from panads DataFrames

t = ResultWidget()
t.widget.layout.display = "block"  
t.widget

Grund Truth Estimation Widgets

Sidebars

class GTDataSB[source]

GTDataSB(path=None, **kwargs) :: BaseParamWidget

Layout for Grund Truth Estimation "Data" Section

t=GTDataSB()
t.widget

class GTEstSB[source]

GTEstSB(path=None, **kwargs) :: BaseParamWidget

Layout for Grund Truth Estimation "Data" Section

t=GTEstSB()
t.widget

Grund Truth Estimation UI

class GTEstUI[source]

GTEstUI(hide=False, **kwargs) :: BaseUI

UI for ground truth estimation

t=GTEstUI()
t.sb_acc

Train Widgets

Sidebars

class TrainDataSB[source]

TrainDataSB(path=None, **kwargs) :: BaseParamWidget

Layout for "Training Data" Section

t=TrainDataSB('')
t.widget

class TrainModelSB[source]

TrainModelSB(**kwargs) :: BaseParamWidget

Layout for "Ensemble Training"

t=TrainModelSB()
t.widget

class TrainValidSB[source]

TrainValidSB(path=None, **kwargs) :: BaseParamWidget

Layout for "Validation" Section

t=TrainValidSB()
t.widget

Pop-Up Widgets

class LRWidget[source]

LRWidget()

Widget for Learning Rate Finder

t = LRWidget()
t.widget.layout.display = "block"  
t.widget

class BasePopUpParamWidget[source]

BasePopUpParamWidget(**kwargs) :: BaseParamWidget

Parameter Pop-Up Widget Base Class

class ParamWidget[source]

ParamWidget(**kwargs) :: BasePopUpParamWidget

Widget for custom training parameters

t=ParamWidget(config=Config(batch_size=8))
t.widget.layout.display = "block"    
t.widget

class MWWidget[source]

MWWidget(**kwargs) :: BasePopUpParamWidget

Widget to customize loss functions

t=MWWidget(config=Config())
t.widget.layout.display = "block"  
t.widget

Train UI

class TrainUI[source]

TrainUI(hide=False, **kwargs) :: BaseUI

UI for ensemble training

t=TrainUI('')
t.sb_acc

Prediction Widgets

Sidebars

class PredInputSB[source]

PredInputSB(path=None, **kwargs) :: BaseParamWidget

Layout for "Data and Ensemble" Section

t=PredInputSB('')
t.widget

class PredSB[source]

PredSB(path=None, **kwargs) :: BaseParamWidget

Layout for "Prediction and Quality Control" Section

t=PredSB()
t.widget

class CellposeSB[source]

CellposeSB(path=None, **kwargs) :: BaseParamWidget

Layout for instance separation with cellpose

t=CellposeSB()
t.widget

Prediction UI

class PredUI[source]

PredUI(hide=False, **kwargs) :: BaseUI

UI for prediction of new data

t=PredUI('')
t.sb_acc

GUI

class GUI[source]

GUI(path=Path('.'), reinit=False) :: GetAttr

GUI for deepflash2

t = GUI()